Scaffold Ga0049081_10012480

Overview

Basic Information

• Taxon OID: 3300005581
• Scaffold ID: Ga0049081_10012480
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3206
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (100.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.701094
  • Long. (^o): -82.854085

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026266	Metagenome	198	Y
F049625	Metagenome	146	Y
F054861	Metagenome	139	Y
F054866	Metagenome	139	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0049081_100124803	F049625	AGG	MLSDIDLKDWIEQPSIPLYDVPRETPVKTPWGMVWFSHIDGMYSLSYDGNGNPVHMKAWVKVNPYRRKQDE*
Ga0049081_100124804	F026266	AGGAG	MSIETITFHFVGQLEDSGAIVDVQCQIDEDGDCRSLDSAMYQGINLLEVISHSQWSDLEWQGSKAYKAEKIEQQTIDHDNQSPLEAIYGLSKPSFNIR*
Ga0049081_100124805	F054861	GGA	MNTKLLKHTRELFKSYDVPEHVRRSYRLKWVRSIRNLGDKWLFAKPITRKETS*
Ga0049081_100124808	F054866	AGG	MSKYTITHGSIAAVQYVTLPDGDRVTVTDARDGSEIELPRLPLEVQAAVNRQFGTIFALPYDSRQGFIDSSIPFDVEVSE*