Scaffold Ga0049081_10011952

Overview

Basic Information

• Taxon OID: 3300005581
• Scaffold ID: Ga0049081_10011952
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3281
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (100.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.701094
  • Long. (^o): -82.854085

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002707	Metagenome	535	Y
F004667	Metagenome	428	Y
F009514	Metagenome	316	N
F017297	Metagenome	241	Y
F048999	Metagenome	147	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0049081_100119521	F004667	AGG	MARPPKVDTVQFRRKLDNPKLQILLSAGQGNISQGFENLLSLYQHLHGIGYRTDSPLETIGLVTNL
Ga0049081_1001195211	F002707	AGG	MTQIEALTQCLVLALTAPNDQKAQKASDLAEQIAQGLTVDQVEDCKAQALELVEAL*
Ga0049081_100119522	F017297	AGG	MKITEQKNGNYTTFERTFPGGYYIVKLYKRGELADKIMTDTYQAARDYLRSFNLIAKNG*
Ga0049081_100119525	F009514	AGG	MTKQQILALQSIGKGIIESANLSSTGAPGGVIYSALMGQGATFNQFEQIMSTLVRHGFLSHDVDASTYHATDAGLQWAKKV*
Ga0049081_100119526	F048999	AGG	MLTITLHQKTDNDGWQSIKSLPIDSSQWGEIDRSWIDTLMQTGSMVITIGHTMYSIDKN*