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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300005581 Open in IMG/M |
| Scaffold ID | Ga0049081_10008991 Open in IMG/M |
| Source Dataset Name | Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 3791 |
| Total Scaffold Genes | 14 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 11 (78.57%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (83.33%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Great Lakes, Michigan, USA | |||||||
| Coordinates | Lat. (o) | 44.701094 | Long. (o) | -82.854085 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F004450 | Metagenome | 437 | Y |
| F011669 | Metagenome | 288 | Y |
| F018719 | Metagenome | 233 | Y |
| F020323 | Metagenome | 224 | Y |
| F039482 | Metagenome | 163 | Y |
| F085065 | Metagenome / Metatranscriptome | 111 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0049081_1000899110 | F011669 | GGAGG | MDDDDDYELANLMHLIATVILVLFAVTGIAGLAGYFWEML* |
| Ga0049081_1000899111 | F039482 | AGAAGG | MSDRLELTEHTVFILNGIKLLPHYTLPVFVTPGHTRTTPLKTWTVEELKDAGAVESSAFLWPRHTLASGGSNG* |
| Ga0049081_1000899112 | F004450 | GGA | MNWVAAALVALVMSTAYLLDGPSEHEARVDTVEEKIQKLCGENAGWKLLDDGSIQCFTHRGFKTKKVQL* |
| Ga0049081_1000899113 | F020323 | GGAGG | VTRLTQLRARLKAAQAELLIRTRTHNSASRAYNKVVAHIAELEKRIDNLAKISN* |
| Ga0049081_100089914 | F018719 | N/A | MTPTFNTWDRATLDKFALEAYLRLQQQQDQLEQLRGDLRNAIEAYRALNKGSSA* |
| Ga0049081_100089918 | F085065 | GGAG | MTKQEMLKILRLLSAMESAMLCNKQTMPDYLFEEIDAVLVLLEKAILK* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |