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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300005581 Open in IMG/M |
| Scaffold ID | Ga0049081_10008626 Open in IMG/M |
| Source Dataset Name | Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 3868 |
| Total Scaffold Genes | 11 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 8 (72.73%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (60.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Great Lakes, Michigan, USA | |||||||
| Coordinates | Lat. (o) | 44.701094 | Long. (o) | -82.854085 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F005702 | Metagenome | 392 | Y |
| F005846 | Metagenome | 388 | Y |
| F023585 | Metagenome | 209 | Y |
| F023833 | Metagenome | 208 | Y |
| F033350 | Metagenome | 177 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0049081_1000862610 | F023585 | AGGA | MSVKRLKLLEEFHAIVSKRLRDLFKDFDHSKRENYKDIINHLDYSHRITKELLERAKKYQKIDMEKAKK* |
| Ga0049081_100086262 | F005846 | N/A | MTSFPLPARPVASAVPASHKEFAKRTSIEGKLNGWCGWFDQETKQGYNRHGKFASNHNLMAERILGAGIKSRFVHCEIMGQRTKTGKGTIVVMDAFDPANPKPYAERMKEIEHLEAVTFDVPQNKLLRFVRLAHHKINAIWEEMNFQNNKAGEVIWEGFVMKALDDGKYPFISKPSYCSYEWQKQRIRS* |
| Ga0049081_100086263 | F005702 | N/A | MAEAKDSLVIFGLIIFVGLVIVRGLYLIAQHIDQQNYERRRFYLSVAADLDRLDKIVAEGNQPKQPELVLPSKNWVGRN* |
| Ga0049081_100086268 | F023833 | AGGA | MKSHSELIQDIINDAMRKAAALERERCAELVQRLADGTEDQVIQDILNEVVVALRRLTDER* |
| Ga0049081_100086269 | F033350 | GGAGG | MSVDVDVPRVKWSMLEWKTQEEKPKNDERVLMDCGGEVVVGRFVDGSFVSRSWGHSENDVRLWASWPKAPKW* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |