Scaffold Ga0049081_10008229

Overview

Basic Information

• Taxon OID: 3300005581
• Scaffold ID: Ga0049081_10008229
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3949
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (58.33%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.701094
  • Long. (^o): -82.854085

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004669	Metagenome	428	N
F006220	Metagenome	378	Y
F007310	Metagenome	353	Y
F013084	Metagenome	274	Y
F015472	Metagenome	254	Y
F039633	Metagenome	163	N
F085699	Metagenome / Metatranscriptome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0049081_100082291	F004669	N/A	MENTTMKLWEIKNFQSSSVKSLFVGQTANGQDCIACAWNSSELYVFAYEGIVDTFLWALETFKSVGQAMAYAKLRNDFEDRRYSLPYHETMEQRTHNQLYMFQLQYLHIFEGTLEIHSNLCDDTPENAIKNLISRGDIEAENSKLVNVLRNREVCA*
Ga0049081_1000822910	F007310	AGTAG	MRTVLWNDTERWFNHHHYEFLIQDITGFNLQENLCSETIKYMAKRLNDTPYHRAFRSKYSVYQDEYKSLVEKFNHQADNNGRIVVQNEKVEAFC*
Ga0049081_1000822911	F013084	N/A	MGIMNVLGMMQEAREVATSRGHNVKNWDVLGGDCYLLECKDCKMQVMVKEYPLPNEIQLGGEAIALDCVKPEKKKLSKKT*
Ga0049081_100082293	F015472	AGGAG	MEPRYLNNGGTRWVTDSKIRVVGIHNGKTYYKMRKPMYWEAMGNFVRCYVKVGDNVFRGTTYDNNGVIEFDIMKSYRLR*
Ga0049081_100082294	F085699	GAGG	MSNPCLNVGHAGASGVTGQKQIKSLLDVTTHIEDYFKQSDVSFRCERNPKGSLVPGGVGVFQFKRAGEGIFYSNGLPVLFVTRLSSENGCDANIGKWYRKQWYYENYLRKINPDCTHLTFIHASESTGILSTLIAGVSMVMAQDFNQHTFNSYNKGGNTIYYYDTDRGNDTWYDIHEKIMNIIRCSKVKVNQPDLFTQ*
Ga0049081_100082296	F039633	N/A	MSEYPGYKNHATFVASVCLSEKIQKLRIQRPNMSILDVKRECVEFLIQHSNHDTVGALIHVIADDIDWEFLYSDAMTLKFN*
Ga0049081_100082299	F006220	AGGA	MKKLKRFVEELALASGTEMMRASQMRPTSFKDKSKYSRKVKHKKGSENE*