Scaffold Ga0049081_10007701

Overview

Basic Information

• Taxon OID: 3300005581
• Scaffold ID: Ga0049081_10007701
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4065
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (41.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.701094
  • Long. (^o): -82.854085

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000141	Metagenome / Metatranscriptome	1941	Y
F002135	Metagenome / Metatranscriptome	590	Y
F004279	Metagenome / Metatranscriptome	445	Y
F006539	Metagenome / Metatranscriptome	370	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0049081_100077012	F000141	GGA	MHAQFKCNGCNRKTEFLWLEQLDTPEGFKAYQCMSCGAVGVKNIAEALHIPDSNIHRCDKCGGWQFLNSGCHTCALIRAK*
Ga0049081_100077013	F004279	AGGAGG	MGFIEIRNGSGFTLRMENDKESLNLSTDRCVSCNDDRLLHDGQYLVCSQCHCRQ*
Ga0049081_100077016	F006539	N/A	MPPTQNAGERMIETTAPWLVLYSILGYLIAWGVYETIKDNAFQSGYWKGRKDGYDMHRRISDSKTNADNN*
Ga0049081_100077019	F002135	N/A	MADTRRKRKKINRRVVRKSPEPLTKLEVFYIAKHEMFRAARKAGFSESVALYLMDSPSSMPDWVVGEDGIIPSIPTPEEDED*