Scaffold Ga0049081_10007689

Overview

Basic Information

• Taxon OID: 3300005581
• Scaffold ID: Ga0049081_10007689
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4069
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (92.31%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.701094
  • Long. (^o): -82.854085

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026266	Metagenome	198	Y
F049625	Metagenome	146	Y
F054861	Metagenome	139	Y
F056420	Metagenome	137	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0049081_1000768912	F056420	GAGG	MTLFKLEEHLIMLLVEDNLLYSEGDWEQLSKVRMAIDDTRTQIENFKKA*
Ga0049081_100076892	F049625	GAGG	MLSEIDLKDWIEQPSIPLYDVPRETPVKTPNGMLLWFSHIDGMYSLSYDANGNPVHMKAWVKVNPYRKKQTP*
Ga0049081_100076894	F026266	AGGA	MSTIDTITFHFVGELEDSGAIVDVQCQIDEDGDCRDLDSVHYQLFNVLDVISHSQWESLQWDASKKYKAEHMEQLTIDHDLDHA*
Ga0049081_100076895	F054861	GAGG	MNTKLLKHSRELFKSYDVPEHVRRSYRLKWVRSIRNLGDKWLFAHHIQRKDTIQ*