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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300005581 Open in IMG/M |
| Scaffold ID | Ga0049081_10007204 Open in IMG/M |
| Source Dataset Name | Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 4206 |
| Total Scaffold Genes | 13 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 10 (76.92%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (100.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Great Lakes, Michigan, USA | |||||||
| Coordinates | Lat. (o) | 44.701094 | Long. (o) | -82.854085 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F003750 | Metagenome / Metatranscriptome | 470 | Y |
| F004476 | Metagenome / Metatranscriptome | 436 | Y |
| F006220 | Metagenome | 378 | Y |
| F059958 | Metagenome | 133 | N |
| F095470 | Metagenome | 105 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0049081_100072041 | F059958 | AGGAG | MATKTSLTTMDAVKKLMEFNKLYNTIVTATVNEKNALSQAEWALEDAKFEILRTVDVKELGSNSEQREAKLSGMLVEQVKVVRSTTLRYELMKAEEQKCRANLEFAKHLVRASEALTEA* |
| Ga0049081_1000720410 | F095470 | GGA | MKKVIWVASEAENWHLYRHFEPIIEDVTGFNLKEDLCSETVKYMAKRFSETPYQRRFRSIFSIYQDDYKALVEKFIKQAENNAKIEVK* |
| Ga0049081_100072042 | F004476 | AGAAGG | MLFSKNGFMSVDTTEAFVKQALEFGNKDVVLSVVHENGVIDIVFSPTMDAIEAEVYHFLNDGTELKYSMPIKTLTDNNISTLHLTSAIYAYLSEAFKVADMFRSTTRQSTDYAN* |
| Ga0049081_100072043 | F003750 | GGAGG | MTLDMVIRTMQVFLYTGGIVAFWQITKHMPKALYTLLECISVMACSVLLLTPISMIIEFVLGGNIDTTMMLAGCLAGVGLLSGIWMVMVQSSRALQGKKEYQYVIL* |
| Ga0049081_100072048 | F006220 | AGAAGG | MKKYKRYNEELNIASGTEMMKASQMRTVVYQDKTKYNRKVKHKKGSNNE* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |