Scaffold Ga0049081_10006717

Overview

Basic Information

• Taxon OID: 3300005581
• Scaffold ID: Ga0049081_10006717
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4353
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (88.24%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.701094
  • Long. (^o): -82.854085

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006842	Metagenome	363	Y
F029021	Metagenome	189	Y
F058947	Metagenome	134	Y
F069714	Metagenome	123	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0049081_100067172	F029021	GAGG	MNICQFCGWEIARPDWYHRYKDKLICNSCVMDTMSKREREGVI*
Ga0049081_100067174	F069714	GAGG	MKIDIKESVMPEYTKCITFDYEGREYMAEVYVSKNCSDYTLYQDNKKLEDKPAWLKKAEEDDEFSFLFFIDDLAWEYEQKKVSV*
Ga0049081_100067175	F006842	GGAG	MTYTPVICGDHLVPISECDCVNYLQELKTSAKRLVQLAKEREEMK*
Ga0049081_100067179	F058947	AGGAG	MAIACKLQDLEVLMNKAGVQLTGNAYDTAQDYLQDNCACATYQYLLGYKAAI*