Scaffold Ga0049081_10006431

Overview

Basic Information

• Taxon OID: 3300005581
• Scaffold ID: Ga0049081_10006431
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4444
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (20.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.701094
  • Long. (^o): -82.854085

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010620	Metagenome	301	Y
F010918	Metagenome / Metatranscriptome	297	Y
F017298	Metagenome / Metatranscriptome	241	Y
F074877	Metagenome	119	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0049081_100064314	F010918	N/A	MKRYKVTYNYFESGKKMIGTRILEALDKEHALQLMAMWPRLILKVETVC*
Ga0049081_100064315	F017298	N/A	METNENTFTPTTFSLKRKMQWWREQSCDGDKGGSFNLELYLDYLNEQDFNEIKQEK*
Ga0049081_100064317	F074877	N/A	MTTEEMKATILLYSIELRDEYNEMVGAFGHTDPAAQRLQTKYATVLVLIEKLGLDENY*
Ga0049081_100064319	F010620	GAG	MRHLLPIIVLSLLFSCSDAKKAQYHYKKAVKFGLSIANDTIKINTIDSFAVIRNDTLIYEKFITTKDTIIQILEMPKTRYQTRIEYKYKTQILKQDVLKYKYIYREAKQQRKAVQITKSKTNWMLLVWGFIIGVLLSFVTRLLIKLYL*