Scaffold Ga0049081_10006250

Overview

Basic Information

• Taxon OID: 3300005581
• Scaffold ID: Ga0049081_10006250
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4500
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (80.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.701094
  • Long. (^o): -82.854085

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002764	Metagenome	531	Y
F043291	Metagenome	156	N
F046909	Metagenome / Metatranscriptome	150	Y
F083939	Metagenome / Metatranscriptome	112	N
F095171	Metagenome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0049081_100062502	F043291	GAGG	MRNLTYTTEVHSIDYGYLTVEYDYFESDDSVGLSETYDWFAYTVEAFESEPAGTEVTYELTAADQASIYAQIKKHHITMLEDFHA*
Ga0049081_100062503	F095171	GGAGG	MLNRTKFPRTFNEAFPNSMENGACIEIHVAQLTLADKVVRVVSLIGLIVLALDCFIWRP*
Ga0049081_100062504	F083939	GGAG	MDADYIINSVKQTSETLYREGDTDQIAKLLYRIQMLEGHIRVLVNHIDNAKDEIKSLQLDLISKDSK*
Ga0049081_100062508	F002764	GAGG	LSPEDEAFEELSRRQGDWGLQGSRKHQILRYAETNARNEVIEEVAQHIEKCTLAFGKDTIQSFTVYIRGMKTK*
Ga0049081_100062509	F046909	AGGA	MKAPPPSKELCLMMAKINYPRDSALSWTWLFAWGFHEMYVDGWYEDWKP*