Scaffold Ga0049081_10004575

Overview

Basic Information

• Taxon OID: 3300005581
• Scaffold ID: Ga0049081_10004575
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5216
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (63.64%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.701094
  • Long. (^o): -82.854085

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000403	Metagenome / Metatranscriptome	1177	Y
F001731	Metagenome	644	Y
F001897	Metagenome / Metatranscriptome	620	Y
F009883	Metagenome / Metatranscriptome	311	Y
F032155	Metagenome / Metatranscriptome	180	Y
F086582	Metagenome / Metatranscriptome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0049081_100045751	F001731	N/A	VTIGGVQYQTAILANLTITSGRTNIYEQAQAGYANLELINLDQSNVAIEINYGLTIELQDSTATFVPIFGGSVVEVGIAVAEVGSVAYAQRIKIIALGALSRLPKALTDGVLSQDFDGDQILTILTDLLINSWNEVPAALQWQTYEPTEQWQNAQNTGLGEIDTPGNYELAQRSSSRTDVYSLVAALATSGLGYIYESATGQISYADSTHRSTYLATNSYVDLTANHAIAPGLSVQQRAGDVRNDITIKYGQNSTSETSANDPDSIAEFGKLSQIFTTTIKHQADAEDQADFYLSLRSYPQFNFNDFTFELTNPELDDVDRDALINIFMGMPTRITNLPLNMAAGTFLGFVEGWTWRAAYNSVALTAIISPLAFSLQAMQWQDVAIAEQWNTISGSLVWADALVVA*
Ga0049081_1000457510	F000403	GGAG	MSDYMEIINPQTRIARLYFNGEVVEEYKVEQCDKCSKLTKFDAFGYQIGYDKTEKIIWFCGDCR*
Ga0049081_1000457511	F086582	AGGA	MIAAIQHCHDKSANHSSRIVKDISWFAYVAQMGESMAAEMVVAKRLGYDYTPGITWDKSKADVGDHI
Ga0049081_100045757	F032155	N/A	MSVGEWTAVGGFVIAILAAVYSSMKIIIKAVMSELLPNGGSSMKDQISRIEARLDYLYTQLIEKQSNTP*
Ga0049081_100045758	F009883	GGAG	MNEISIVIFMVIAGFLWAVMAYAVGFKEGQRQGYTRGRAVSRHISQLDKAGK*
Ga0049081_100045759	F001897	N/A	MDNYEGNKERTDRWLATFPKGRLEAHIIEFNAEKGYVLVQAKAWRSQTETEPAGIDYAYGYLAAYPDKMKRWMVEDTVTSALMRVMALVMGGAEKATQEVMTLVKTETPAADYDYWTTKHGDVPSYQTSAEAEAAGTPSFGSSEDAWVPNAVPTCSHGSMRWNQSKPDAAKSWGGYFCSEKVKAMQCTPRWYVLRSTGNWEPQV*