Scaffold Ga0049081_10004539

Overview

Basic Information

• Taxon OID: 3300005581
• Scaffold ID: Ga0049081_10004539
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5229
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (84.62%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.701094
  • Long. (^o): -82.854085

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009516	Metagenome	316	Y
F093500	Metagenome	106	N
F100671	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0049081_1000453911	F100671	AGGA	MTDKINYRMDPKTGRPLHLFGDRAVVLNDDGSTVTEHYDENGRLYRTSYKSVPYPKDWKPE*
Ga0049081_1000453912	F093500	GGA	MTDEEAEAFENYDQRAEATLAYRLMEHLAFRGLITDIEVSNLRYPPCELIVDAEEAWDE*
Ga0049081_100045399	F009516	GAGG	MSRPMFYPMGTLAIGEVGTMPATDKGAAKRTSRNVSQYGIRNGKCFKCRTVNGVTFITRLG*