Scaffold Ga0049081

Basic Information
Taxon OID	3300005581 Open in IMG/M
Scaffold ID	Ga0049081_10004222 Open in IMG/M
Source Dataset Name	Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300005581 Open in IMG/M

Scaffold ID

Ga0049081_10004222 Open in IMG/M

Source Dataset Name

Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	5414
Total Scaffold Genes	13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	8 (61.54%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

5414

Total Scaffold Genes

13 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

8 (61.54%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location
Location Name	Great Lakes, Michigan, USA
Coordinates	Lat. (^o)	44.701094	Long. (^o)	-82.854085	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Great Lakes, Michigan, USA

Coordinates

Lat. (^o)

44.701094

Long. (^o)

-82.854085

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F005702	Metagenome	392	Y
F005846	Metagenome	388	Y
F011284	Metagenome	292	N
F023833	Metagenome	208	Y
F027777	Metagenome / Metatranscriptome	193	N
F033350	Metagenome	177	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0049081_100042221	F033350	GGAGG	MSVDVDVPKVKWSMLEWKTIEEKPKNDEKVLMDIGGEVCVGRYVDGSFVSRSWGHSENDVRLWA
Ga0049081_1000422213	F011284	AGCAG	MTLEQGVEKTQKHFTKKHELHLTTLQVAAVESMEKKYKRGVEEHGGTKLWEMPSVKLVENAIEEATDQLTYLLTLRSQMHIVLELARDGCTDETLTNPRARECCHLIYTTLTGQSKPPL*
Ga0049081_100042222	F023833	AGGA	MKSHSDLIQDIINDAMSKAAALERERCAELVQRLADGTDDQVIQDILNEVVVALRRLMDER*
Ga0049081_100042224	F027777	AGGA	MSEELPTFWHQEPANKKLPNETTDEWVVRVFGAFPDTEFDQRNDFRCLNLPTTAKENAEGFGIFDYGDKQ*
Ga0049081_100042226	F005702	AGAAG	MLLIIFLVSFFGLLILQGVRLFAKHIDQQNYERRQFYLYVAAELEKMDKIVAEGNHPKEQGLVLPTKNWVGRN*
Ga0049081_100042227	F005846	N/A	MTSLPLPARPEGSPIPASHQEFSKGVSIEGKLNGWRGLFDQQTEQGYNRKGQFAFNHKLMADRILGAGIKSRFVDCEIMGQRTKTGKGTIVVMDAFDPANPKPYADRMKEIEHLEAVTFDVAENKLLRFVSLAHHKLNTIWQEMSFQNTKAGEVVWEGFVMKATDERNYPFITHPNNHSPSWKKQRICS*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0049081_10004222

Overview

Ecosystem & Geography

Associated Families

Sequences