Scaffold Ga0049081_10003986

Overview

Basic Information

• Taxon OID: 3300005581
• Scaffold ID: Ga0049081_10003986
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5564
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (76.92%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.701094
  • Long. (^o): -82.854085

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001092	Metagenome / Metatranscriptome	780	Y
F003266	Metagenome / Metatranscriptome	496	Y
F006103	Metagenome / Metatranscriptome	381	Y
F051708	Metagenome / Metatranscriptome	143	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0049081_1000398611	F051708	N/A	MLTHKDPEVQAMLGLLESQRDHAMGLVAAMAKENAELKARMLDAPEPEQQHDDAV*
Ga0049081_1000398612	F006103	GAGG	MARTSFSGPVRAGYQGGTAAPQQPLTPTTINAGTVIPVNEGTATSGFYARVMPTVGFGSSSYLTPGEAFSVFGRVQCGAPFSVAPSTTFNHMAGTVGEFAVIGTYSNNGLMAGVMGIINTNTLSGDAAVMAFMDGDSGVTTARCAFGVAMAQTTGGSGFEYGLDLKMQDPVLDGGGPSGVIPYTKANIRMEDDVVVMVNTGAPVDGTTGDNFAGPGSMYIDSTAGNLYLQTAVITSPVWKLVTRAS*
Ga0049081_100039863	F001092	GGA	MATAKPKSSVVKSLTKAGFYGASKPKRLGIINKVTTKPQRIEMVDKLFLAKKVKGGKK*
Ga0049081_100039867	F003266	GGA	MTQTHDTVKNIIDLASVVAAIGSFLELLTPIFGFIGAVWTLMRIAEMVTGKPFSEIIGRKKPDASNK*