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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300005581 Open in IMG/M |
| Scaffold ID | Ga0049081_10003967 Open in IMG/M |
| Source Dataset Name | Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 5578 |
| Total Scaffold Genes | 10 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (70.00%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Great Lakes, Michigan, USA | |||||||
| Coordinates | Lat. (o) | 44.701094 | Long. (o) | -82.854085 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F007911 | Metagenome / Metatranscriptome | 342 | N |
| F015449 | Metagenome / Metatranscriptome | 254 | Y |
| F044969 | Metagenome | 153 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0049081_100039673 | F044969 | GGAG | MSATLTVNPIKLQRALKAFIGSTKLQASKEMRIQARNLCVSLANSTQPFGKDSRAKAIGEKAVTRDIDRVYKSGSTAVREIAALPLPKGKTKTQNAKQAAAALAAIALGRSFGKGQKGVRAQTKAQELINRLNYKPYIYTKIGEFDRGAAHENARFGRSKRVPKNQFVSQVVTKESDLAKYFKEKRGNVGIAKSGWAVCAGLLGGFKGIPKWVYRHTGGGRVVDNSKTNPSIFSKPSITMTNTIPWITNVISQSTIQRSIDIQVIKMIKRLAIIANYERKKAGL* |
| Ga0049081_100039676 | F015449 | GAG | MVDSFWGTTNIKVAAAASAFGAKLRQSDPVTCIIKEDTGQRQFTFWFTISGGDDAKAEMERTWADMKSDPESPIRYVRAALENRETLLSLMKRAEPIMSIQRGGQTLLVSERASPELKRAMLKKL* |
| Ga0049081_100039678 | F007911 | AGG | MPAVTMLDRLIESAFSELLSATVTGVNYHLSHDKTENLPPSIIIKATLGTEEPVQGSGVFSVPVDIIVEDSYDDTTVDAHTQKCSKVLQAFYDSSPLATRLNATTAIGSARCYNAKLDSVEPEADDEERTMRRTYRLAVIAMPNSIAS* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |