Scaffold Ga0049081_10003805

Overview

Basic Information

• Taxon OID: 3300005581
• Scaffold ID: Ga0049081_10003805
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5691
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (70.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.701094
  • Long. (^o): -82.854085

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000934	Metagenome / Metatranscriptome	828	Y
F002085	Metagenome / Metatranscriptome	595	Y
F078706	Metagenome	116	N
F083714	Metagenome	112	Y
F086839	Metagenome / Metatranscriptome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0049081_100038053	F002085	AGAAG	MANNIPPIQNTNNIRMADFIRITTQNSLGVTEIYRLASTPSVLTIPAVDALPFDALGPLVKVGDASRDIKSTANETSVTLVGIESAQLGWVLSNKIKGSLIEMWHGFFDDNNELITTGGTGGLYKFFTGYVNSFNITEQWFEEGKMYLGIINVTASSIQIILQNGTSGRYTNNNSWQFFAAGDTSMDRVAVIQNINYFFGKDKDPTVYRT*
Ga0049081_100038054	F000934	GAG	MATLNTILSISESVGIEDQRFIGQMMSRNQRIATSEIIGVQPFGFDMKPMNYLLYSQNRPLLSTLRAADRQFEQYLNFGATGWVNYIAYQGDMSSAEITACQYQITSANKTIVLGSLPTMGATEFIVKTGDFLQIDRYAYIATANVQRGSGSTVNIPVHRTIMTTLASPMNAVIGQYGITQSIGGNTFTGVTFPVILQQYPQYTLIPMTNDSFIQWSGSFKAIEAVL*
Ga0049081_100038056	F083714	N/A	MVFNGHTIQDIDALDEATMNEITVMYADGLVGNRSLLSMQGTLIAGVFNYLRASNSQAYTLKSVLGSAYEYFYGIEKADPSQSLLMFMSQAPNFKMDRFKGK*
Ga0049081_100038057	F078706	GGA	MSKLGSALGKKYEENRLSVLTRSFELGDHTFKVRVPSVQEIEAIYNYFKNPNEDKVEAEYQLMIKAFENIKDQEGVEVKDNDFIIDGRSVRETAKNKHILQHRIVEYIKFLIPETGSLEDITYEDVETEFPLSVQMTLVEKINEVISPEYKDIKSK*
Ga0049081_100038058	F086839	AGG	MSVKFAVNGLKETLNAFKEFQEQFGDKDSKSKVLIPAVRDAMKPVLAMAKALSPKDTGALNNSLYVTARRPSRKDMKSRYVTPKDSVISLVSSRPIPKKVKQQFQAQYGDLKGKEYKKARRKFYTEAGVMFDARAIANEFGTANMSAKPFMRVSLESQAQMVATRLGMIIKQKMDAYKAKNLTTQGK*