Scaffold Ga0049081_10003505

Overview

Basic Information

• Taxon OID: 3300005581
• Scaffold ID: Ga0049081_10003505
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5916
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (75.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.701094
  • Long. (^o): -82.854085

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011740	Metagenome	287	N
F017799	Metagenome	238	N
F034845	Metagenome	173	Y
F042326	Metagenome	158	Y
F059946	Metagenome / Metatranscriptome	133	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0049081_100035051	F011740	N/A	VNSITTADRFATCVTTYDAARGTAQLSCEIMERLVEMHEMRHTSAADLCRRLGTLADLSPSMFLTTVRLGSGDVHAVRQSFAEMAEQTGRTRQALHYEWAHEVAKVRMVFPELAQLMADYRQSTDEPERGDSEEGR*
Ga0049081_1000350510	F042326	AGGA	MISDALILAATFASGGLIGYIVGSWRGWQRGRDEQWVECFLAGEKREKARREADGRFKAKTKS*
Ga0049081_100035052	F017799	GGA	METNNDNERRELEALRFSSRAARAITTLEVQRKAIGREYGERIKKIKALILILQQRESLGQMGIEGIDAVEITPELKKLIYNPVGDLS*
Ga0049081_100035055	F034845	AGGAGG	MTAARTAYWREYNRRNAAKKREQYAAFRERNKEKINAGKRALRAAGKVAPRKASAVRAVKPTVAKPRTDEGKAEALLTLREKFAAFRAAKHGGTNE*
Ga0049081_100035059	F059946	N/A	MNKRKSDEAKRHQCDAMLAQFMPVKTIAQALRMSRGTVSERAKRAGMHRHYITEAEVRLLFKNRIGGGAK*