Scaffold Ga0049081_10003464

Overview

Basic Information

• Taxon OID: 3300005581
• Scaffold ID: Ga0049081_10003464
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5945
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (63.64%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.701094
  • Long. (^o): -82.854085

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001805	Metagenome / Metatranscriptome	631	Y
F014609	Metagenome	261	Y
F018353	Metagenome	235	N
F023328	Metagenome	210	N
F028786	Metagenome / Metatranscriptome	190	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0049081_100034642	F023328	AGG	MTVYTPTYRITIAGTVQTSTTLEDATITYGRNDFFEATQPSYCNLELLNLDGTSPLVELLDTIIIEVTNSTGAYVKLFTGEVSGVYNRFEGAGLGGKPNTLQIQAIGALGLLVKRYAGSVAYPEELDGARIQRILEETLYVAWEDISNTFTWNDFTTETWANYGVQGIDTIDPGRYEVLARPAEIEQAYNLTDTTQQSALGYLYDTPEFEIGYADAERRSANYTTNLIELDANLVNADIQTRLQTADIVNSVVIQYDDPVLEVAAQNDTSINNYGLLEEVRSTILAQTADATEQATNFVNYRGTPKVSLEEVTVNLAHSDMTNTVRDNLLGVSMDTLLYLDNIPVGLIAEGYNEGFVEGWTWTLGRKNLELTMSVSNSIYSTLDVQWEDYNSVIQWQNLDNATRWLDVI*
Ga0049081_100034644	F001805	AGGA	MTMAKSKEEQIFIGDGDQVIELTGADKEAFILQREADNAERALLEAEYKAKQEARESAIKKLAEIAGLTKDELNAIL*
Ga0049081_100034645	F028786	N/A	MQSFNYKQVSLAAIAFLAAWQATDFALDYRAVLGAVVAASMGAMNPNVKSKIK*
Ga0049081_100034647	F018353	AGG	MSKPKAKKTVIELPDVMASELVRIINTAHEEGKLITGFVTCLELFDGKKKTIKIVANQDMPQHSVFGIINYAAEKYQFTVAPDEDEDDDFYDPNWFDGQ*
Ga0049081_100034648	F014609	N/A	MINELIGIIGLLVTILVLTIRATVEITKMKSQLFPNGGSSLADKVTRLQIDVVKIRSTIDSISTELGKPKRKR*