Scaffold Ga0049081_10003380

Overview

Basic Information

• Taxon OID: 3300005581
• Scaffold ID: Ga0049081_10003380
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6007
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (58.33%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.701094
  • Long. (^o): -82.854085

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001805	Metagenome / Metatranscriptome	631	Y
F008616	Metagenome / Metatranscriptome	330	Y
F008811	Metagenome / Metatranscriptome	327	N
F012447	Metagenome	280	Y
F014609	Metagenome	261	Y
F018353	Metagenome	235	N
F023328	Metagenome	210	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0049081_1000338010	F018353	AGG	MTKPKAKKTVIELPDVMAGELVRIINTAHEDGKLITGFVCCLEMFDGKKKTIKIAANSDMPQHSVFGIINYAAEKYQFTMSPEEDEDFYDPEWFDGQ*
Ga0049081_1000338011	F014609	N/A	MINELIGIIGLLVTILVLTIKATVEITKMKSQLFPNGGSSLADKVTRLQIDVVKIRSTIDSISTELGKPKRKR*
Ga0049081_100033802	F008811	AGGA	MATTILSGRQLTLTIATVAYSEQILDSAINFDTERLTFDTLAGKAFKYIDSNVTLDLTFLNDAGKTSPGSLYKALWDATESAPDTTLAFVLTLATGITLTGAVLPQYPGISASGSDAQTCSVSLQVVGIPVEDLTSA*
Ga0049081_100033803	F008616	AGG	MLKLKIRWELETGEVYEEWTRPNELAQAEKELYSNRSIIKILSEESSPSNQLLLFLGHKIQQRVTKKNESIDTWKPKVTDIAAVDFETANFTKPEASGG*
Ga0049081_100033804	F012447	GAG	MAKAISLVPVDREYKGLLRAFGKMDDIAKNDMKKIAQDLAERGAAYAKGSATRAPYNPKQAVAVAESIKVSKSDKAPSFSIGGRAKVGSSAFSAGYVIMGSEFGSKQYKQFPRRSPSQGRGNRGWWLYPAMSRFQPTIAAEWLKGYEKVRDAWTGRV*
Ga0049081_100033806	F023328	N/A	MTIYTPTYRVTIAGVVQTSTTLEDATITYGRNDFFEATQPSYCNLELLNLDGTSPTVKLLDTILIEVTNSAGTYVKLFTGEVSGVYNRLAGAGLGGKPNTLQIQAVGALGLLVKRYAGSVAYPEELDGARITRILEETLYIAWEDISNTQTWNDFTTETWANYGVQGIDTIDAGRYEVLARPAQVEQAYNLTDVTQQSGLGYLYDTTDFKIGYADAERRSENYTANLIELDANLVNADIQTRLQTADIVNSVVIQYDDPVLEVEAQNDTSINNYGLLQEVRSTILAETADATEQATNFVNYRGTPKASLEEVTVNLAHSDMTNTVRDNLLGVSMDTLLYLDNIPVGLIPEGYFEGFCEGWTWTLGRNNLELSMSVSNSIYSTLDVQWEDYNALIQWQNLDNATRWLDVI*
Ga0049081_100033808	F001805	GAG	MTKSETIKIQIDNQVIELTGADKEAFIADREATNGQIKLREAEYKAKQDLRESAIKKLAEIAGLTKEEINAIL*