NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0049081_10002751

Scaffold Ga0049081_10002751


Overview

Basic Information
Taxon OID3300005581 Open in IMG/M
Scaffold IDGa0049081_10002751 Open in IMG/M
Source Dataset NameFreshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6635
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (61.11%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location
Location NameGreat Lakes, Michigan, USA
CoordinatesLat. (o)44.701094Long. (o)-82.854085Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009887Metagenome311Y
F024787Metagenome204N
F026555Metagenome197N
F027846Metagenome / Metatranscriptome193N
F033425Metagenome / Metatranscriptome177Y
F045093Metagenome153N

Sequences

Protein IDFamilyRBSSequence
Ga0049081_1000275110F009887N/AMGDMEMIDPQGVRARFTDDGVEVDIVPFSECCEFCNDPRMMNVNGVRRCAGCGCINHIEYRVHE*
Ga0049081_1000275111F026555GAGMSKFDYHKAMRDGHGYNIYVADLLASFGIPKVDVPKFSIATTHDQIRDKTLNEKDIVVDDLILEVKSSSRSFTDVDDFPHNPLIVDTVYGFDSKIIKPFAYVIISQITHNLFVIPVSTKYDWGIQEYYDSQRDITERFYMVQKRHCRPFIELVDVLLERANERTNQMQ*
Ga0049081_1000275115F033425GAGGMAIITSQVTVTGTSQSIISVDNVTRDVLLHAKHEVFIGNSGVTSTSGYILDNGDELRLSLVDGEDLWAVTAGGSGTLHVLVSKVD*
Ga0049081_1000275117F045093AGTAGGMETQNARPLKIVANGKPKKKLGRHTNAMVKSLTGRNDIDQVKREMLLGLARAWDRIEESGKGGHTIPSISKELREIWDSCALPDEDDLFE*
Ga0049081_100027517F027846AGGLELVKYDKQSGAYVDENRKHFVKASLIRQHAKKAIGARQVRGRLSAKMVEAYWLDKFKEAVKYEL*
Ga0049081_100027518F024787AGGAMNYEIYGWLITASLLVLVALLIGVTWIVAVENGYDKGFKSGYKRGTTDTKQTNVKVEKFTVRTHPTMRQKMLEADNEYLMEKVVSLWDRENK*
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