Scaffold Ga0049081_10002464

Overview

Basic Information

• Taxon OID: 3300005581
• Scaffold ID: Ga0049081_10002464
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6976
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 9

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.701094
  • Long. (^o): -82.854085

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000785	Metagenome / Metatranscriptome	891	Y
F001754	Metagenome / Metatranscriptome	641	Y
F003291	Metagenome / Metatranscriptome	495	Y
F005389	Metagenome / Metatranscriptome	402	Y
F007113	Metagenome / Metatranscriptome	357	Y
F010916	Metagenome / Metatranscriptome	297	Y
F011393	Metagenome / Metatranscriptome	291	Y
F031098	Metagenome / Metatranscriptome	183	N
F037728	Metagenome	167	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0049081_1000246410	F001754	N/A	MSTIANPFKNFSASKMSNNPRFEVVVSFTDFLGKSHRIVCNSRRKLAEANDFLKMFKSESVKINQILSEYPVVMGMFPKKYHSEIKRELASAGFSAVSKFLIK*
Ga0049081_1000246411	F003291	N/A	MSTNQMNEKLVSVFNQDELAALMTAMAGYINVKRKQGRATGIESVVFNKVTDALLLSNYMNATVIDRGNGKMGVAEYKMSEAQLDAMYDSDVKAHS*
Ga0049081_1000246412	F007113	N/A	MKLNLTPEELKTVEIALNELFNSDTWVGGRKEADIDKIANRAQYLLHVIESYNKNNKK*
Ga0049081_1000246414	F010916	N/A	MIVDTIKSDLYDMVQKHDYSYMMSDSHSIWEAGMRVDKEIQAKLHALIAIHKEDAEELYVFTKYIAGPDYTDSDKNGNGLKYRVINSWFKPYIDEVN*
Ga0049081_1000246416	F031098	N/A	MKTYYDIAIHTASKDVVRIKGVSYSQMMKIANDNPTLLKVEIVKEYSKKISKY*
Ga0049081_1000246417	F037728	N/A	MKRLNITNFTKRMMEIHSDFFMVKHCSEDRDKYLIGLEVRDVISFKPLGPKYYKMAIDKVCRVDGNYGIWLWDIGENISYPMSIMPDNISSLSEFTSFLNNTLKVADRGDFSGDVGNRIDNK*
Ga0049081_100024642	F000785	N/A	MRVTNKRGMKFDCAKLMNWAAEKLGPSKCTAIAFTWDSDEESCGWYNWDETIWINLASCKRMITVQKTLLHEWTHAQQTFRWYNHYNLKVGYRNNPYEIQARENEKLVKRAYKKSK*
Ga0049081_100024643	F011393	N/A	MPKGEQVANNRCEHCIVVLHTNEVGEYYPVVNRLDVHTLIRGEYHPIGNSFQYPKNWGKRKGATILLEHRIEDKQKQIKDAELELAKLSACLEKVKEWDETVLY*
Ga0049081_100024648	F005389	N/A	MANKSKQPAKRGNIYETVSNNIQKITRPSGTVSYRVRVTEEGEMYSQYETSLKKAKALRNSWVG*