Scaffold Ga0049081_10002200

Overview

Basic Information

• Taxon OID: 3300005581
• Scaffold ID: Ga0049081_10002200
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7349
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (82.35%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.701094
  • Long. (^o): -82.854085

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006653	Metagenome / Metatranscriptome	367	Y
F093236	Metagenome	106	Y
F100350	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0049081_1000220015	F100350	AGGCGG	MIYAFKCECGSTREIEQSIHAEILEPMCTDCHQSMSRSWSSPAVTFKGPGFYSNGG*
Ga0049081_1000220017	F093236	N/A	SRESVPSPYGPVRAGLTTSPITQDQRLSELLSSLESVVENLNYKSFTLYDMLNTAIEEISAVLSGTVIEEGGTDV*
Ga0049081_100022006	F006653	GGA	MAEESLSNKYRENLKIEALRTDVDAIKVDLTNFVGALLQSGIVELVKDEAGDVVYKINKVVLVDEQPEVQ*