Scaffold Ga0049081_10002116

Overview

Basic Information

• Taxon OID: 3300005581
• Scaffold ID: Ga0049081_10002116
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7472
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (73.33%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.701094
  • Long. (^o): -82.854085

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006261	Metagenome / Metatranscriptome	377	Y
F011482	Metagenome / Metatranscriptome	290	Y
F020531	Metagenome	223	Y
F027488	Metagenome	194	N
F057363	Metagenome / Metatranscriptome	136	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0049081_1000211611	F057363	AGGAG	MNNKQKAMLASYGRSFLAAVTTAFMITGGDIFALDTDSLKAILAAGVSAVLPVALRAANPNDPAFGKVADAITASVTKKITAPTKKASVKKKA*
Ga0049081_1000211614	F006261	GAGG	MATISSGYTTSEPILVDNPATWSFTAPENPDIKVVGVTVEQPLSQNIVEAYGVFKPLGASKSVVISQSIYGVDGTYQFTVQGETAWDALYPVLTYQGTLHVHDPLGRQKYVRFVDRNWTESGNINNLIRVIKVTYFEVDAP*
Ga0049081_100021164	F020531	GGGGG	MNSLLIEPLNSQRNSEMNLSDIAILLGYIGIYDLRVQVDELKVRAWAQSLDSDIDLEEAKKIVSAHYSNHDTAINPSHINREWRHRLASRRERERSQRMSLEYEENEKRKASPEAVAKYMAEIRQILNRGTDASLETDNGQVASDS*
Ga0049081_100021165	F027488	GGAGG	VSIRWITKVWSDSPYDGTKLLIHLALADISHDDGRFFASQSNLASKGRCSIEYVRKVINEMIADGHLKIITKGNSRGNATVYQLIWKKLPNSVGEEQSLGEVELPNSEGDNSPTLMPSLPNSTPYHPSYTSVLSTTKSDETAIAVVADWEQVAKQWWEKQRVKPLGKGAWHSLLQICKAAEARGYSKEQIEQALDYIGTVPTMRQMDLVLRGVGVKTKHEQSAHRAIELAEKLRDESI*
Ga0049081_100021169	F011482	AGGAG	MRRLDDLTMEVKQMNLNVSQTYLRKDVYDSDSERISQAMEHITDRLEKMESRSEWVIRTVGALFIATVVGASMYVGQIIGL*