Scaffold Ga0049081_10001744

Overview

Basic Information

• Taxon OID: 3300005581
• Scaffold ID: Ga0049081_10001744
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8207
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (38.46%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.701094
  • Long. (^o): -82.854085

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006018	Metagenome / Metatranscriptome	383	Y
F020529	Metagenome / Metatranscriptome	223	Y
F041152	Metagenome / Metatranscriptome	160	N
F099167	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0049081_1000174410	F099167	N/A	MNLVMNSKILKRTIDIAKAMCPLNLEHRCSHIAFLIKCGKIVHIGTNNCKSHPETLKYDYKNHQLVGLHAELSVCMKSGKEDLRDFKMVVLRVDRTGKLNNSKPCCGCQSVIKQFNVGEVWYSDSNGDVIKNEN*
Ga0049081_100017442	F020529	AGGA	MFSNKNIVKYCAKYFVLLTVGAYVFNTSVIFINQKSDVANLAGSALFAGLFISTLVILKSDVTKLVKKLEENKNKENE*
Ga0049081_100017444	F041152	GAG	MNIVDYIVKNWDTLPKSKFDGDHIVIFKEIENWDGGYGHHSYEGIGVDKDGNVTWCYSSGCSCSGGPSLDTKKDLKVFVVNNGIDLNVDPSTINFDSLQVEFNSY*
Ga0049081_100017446	F006018	N/A	MKKYSIKTNDIGMCMSVGCDFYQTCTNNSVNMFYKTKRKFEPVLEESICLSYSSGKNSKDYPDNCYPNVLKKIYESGY*