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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300005581 Open in IMG/M |
| Scaffold ID | Ga0049081_10001635 Open in IMG/M |
| Source Dataset Name | Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 8443 |
| Total Scaffold Genes | 16 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (43.75%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (60.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Great Lakes, Michigan, USA | |||||||
| Coordinates | Lat. (o) | 44.701094 | Long. (o) | -82.854085 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001872 | Metagenome / Metatranscriptome | 623 | Y |
| F002421 | Metagenome / Metatranscriptome | 560 | N |
| F002794 | Metagenome / Metatranscriptome | 529 | Y |
| F014971 | Metagenome | 258 | Y |
| F033005 | Metagenome | 178 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0049081_1000163511 | F002794 | N/A | MERKMSEGVAWNQGELSEETRRMVLEQAMQTNHTMAMFDLIDDIMAVKKNPHASIIQRLKGMKNSLSLEDPMPLHDVTTLDLAIKALQAHS* |
| Ga0049081_1000163512 | F002421 | AGGAG | MKTCTICKEQIAYPEITGKTHFVCDGRVPAQKNAPFIEGMLASQSSADARWTRPQQNEVDAAIVHVARTKGFFTSDDIWKHLGDQFPVTKGIAGRLNAAARRGIIRNTGELAYAQRGGAHDHAQRLSVWAAI* |
| Ga0049081_1000163516 | F033005 | AGG | MTRKLTEHDTTIYKQARAELLRDSPICHWCKKNTATELDHLVESDKGGTIEDGYVASCKSCNSARGATYRNKKLANAKQ |
| Ga0049081_100016355 | F014971 | AGGA | MTYEEAIAMYPHSEIHIQIDDVVRPMTPAEYEEFIQRQVDAPPAS* |
| Ga0049081_100016359 | F001872 | N/A | MQALGVSIAKAKPGVPNARDYIGNADGASPAPRAGMNEWIKQAIAASNGALWNNGSWGQRDMRGKPGSLSVHATGRAVDLSYRKSEKNPKAGRKEALVFIDKLVANANDLGLQCILDYFPEPQGRAWRCDRYAWLKYDKPTIHGAPGGDWFHIEITPQAADSVIWVKAAFLKVFGEIPPKDTPIP* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |