Scaffold Ga0049081_10000988

Overview

Basic Information

• Taxon OID: 3300005581
• Scaffold ID: Ga0049081_10000988
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10716
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (56.25%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.701094
  • Long. (^o): -82.854085

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014249	Metagenome / Metatranscriptome	264	Y
F058998	Metagenome / Metatranscriptome	134	N
F073149	Metagenome	120	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0049081_1000098812	F073149	GAG	MPNYYNRTNPSDLRDLAQSLIDTWEETNNPKLQEWIAAPPKPAPNAIWDNGQWVIPPPPSWTAEEWLNKEGYNSTGLVTLLDLSGQLISAGKSSPKLTAVKGWTDGMIAAYAADQAPRSDWTNAPFGFTETTQEAIAILNS*
Ga0049081_100009883	F058998	GGAG	MSRQTKEHPKPEHDLQGKIREAEFKNILQKLKDGKTLTARESKIASEFAAQRDGKNKPLTQQEVARAWGMTQPNVHKMVKAGMPLTSIEAAEEWRKEWLKTHGRGDTAPESIQEAKLRKTLLECEKIEFSLSVDRDEYVKRTEIREAGIRIGAIFSAKLAALVNDASGALAGLDEASLRKKLHERTQAILAEIRNELEKV*
Ga0049081_100009887	F014249	AGGA	MAMNKSFFGLPLATLQELQGDFTACLKAIAVAGASYSIAGRSFTRANLAEVAQTIKELQAAIDNASGSRIRKFTPTFPTQRP*