Scaffold Ga0049081_10000854

Overview

Basic Information

• Taxon OID: 3300005581
• Scaffold ID: Ga0049081_10000854
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11603
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (93.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.701094
  • Long. (^o): -82.854085

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000324	Metagenome / Metatranscriptome	1299	Y
F000332	Metagenome / Metatranscriptome	1283	Y
F001061	Metagenome / Metatranscriptome	789	Y
F005117	Metagenome	411	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0049081_1000085411	F000324	GGAG	MNLITPRFTVTQDGTTLNVYHANKGEGLPKHDHVFSHLTMCHSGSCVVSNERRSLVMTKDTQPVNLMANEWHEIEALEDGTVFVTVFAGGKY*
Ga0049081_100008543	F001061	GGAGG	VAELNVRPPNLPLAPDEYDRRYQDQLNNTLRLFFTLLNNPGDMGGATLNLNLNTLPTDADLPTLRLGDVYRDTQDGVQDTSQMLRIKTST*
Ga0049081_100008548	F005117	GGA	VKISYDKWYPVVQPNPPMQSEVFAKRVERLDAERAVQVQIDQQVKKFHQYEYEIYEYRMRQVTINIDITNLKREIDKLV*
Ga0049081_100008549	F000332	GGA	MRWLLLLLLLGLVGAVAKNGCHVREFYGIGYTVHDPTQRHKEMLAWLIHNAEYCKTTDYTVIWNNLPDWAGTADTVILRSKIIHGYKDALDREKK*