Scaffold Ga0049081_10000797

Overview

Basic Information

• Taxon OID: 3300005581
• Scaffold ID: Ga0049081_10000797
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11926
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (61.90%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.701094
  • Long. (^o): -82.854085

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006891	Metagenome	362	Y
F007911	Metagenome / Metatranscriptome	342	N
F009066	Metagenome	323	Y
F014487	Metagenome / Metatranscriptome	262	Y
F015449	Metagenome / Metatranscriptome	254	Y
F031026	Metagenome	183	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0049081_100007971	F007911	AGGAG	MPAVTMLDRLIEAAFQELLSATVTGVTYHLSHDKTENMLPSIVIKATLGTEEPVQGSGVFSVPVEIVVDDSYDDTTVDAHTQKCSKILQAFYDSSPLANRLNATTAIGSARCFNAKVESSEAEADDEERTMRRTYRLAVIAYPNSIAS*
Ga0049081_1000079715	F014487	N/A	MPLLLLALFFCSCSPKKHTENNALPDYGEMGAATDAGQVK*
Ga0049081_1000079717	F006891	AGGAG	MSTDQVAELSERLSLVRESIARIETRQSVILDLLERSQASLGEYHGRLTNMERDAHTIKTKLWLVALVSGAVVSTVWELIKRRFSL*
Ga0049081_1000079719	F031026	GAG	MRGGLNALLLVLSLALCSCATTSQTQDGPPPSPDSISYFIYEWDKAERTNKPCPQAYRDLFAKSLKALSDSLAETERERARQ*
Ga0049081_1000079721	F009066	GGAG	VTPEHEKHLAGILRDLTKDLDAKYRRGQDEHGGALWRRPVWKDAWEEVLDLCTYVHTLKMQLSVIAEIALIGASDESVVAAQSRESCRQILAVLEGFP
Ga0049081_100007973	F015449	N/A	MIDSFWGTTNIKVAAAASAFGAKLRQSDPVTCIVKEDGHRQFTFWFSVSGGEEAKAEMERTWADMKSDEESAIRYVRAALENRETLLGLMKRAEPIISIQRGGQTLLVSERASPELKRAILKKL*