Scaffold Ga0049081_10000731

Overview

Basic Information

• Taxon OID: 3300005581
• Scaffold ID: Ga0049081_10000731
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12518
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (65.22%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.701094
  • Long. (^o): -82.854085

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009265	Metagenome / Metatranscriptome	320	Y
F009526	Metagenome / Metatranscriptome	316	N
F031795	Metagenome	181	N
F036209	Metagenome / Metatranscriptome	170	Y
F038217	Metagenome	166	Y
F040539	Metagenome	161	Y
F040620	Metagenome	161	N
F044983	Metagenome	153	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0049081_1000073111	F040539	AGGAG	MRWLRKYVSAITADTYTYVGLLIAYFTLDGSAKKVTGLLIIVGVAVFLVTLPLRDDDTPEE*
Ga0049081_1000073118	F031795	N/A	VIFAGVNEYADNTISNISISLGRRDIYEQALVGIANVSLWTDADTALNVNLSDSVEIQIKDTDDVYQTIYTGTISDIAIGLDAYGEIGSVARYNLTAVGPLAILNRFTTGGLGFAKEFDGTRVLNILSDAFLESWSEVVPTLTWSAVSSLATWDNWGGGNQTLVDNLIADIDTPGTYELTAYNDGPANALTLAQNAAQSGRGFLYEAPDGSIHYESYTSRASVTPLTLTDDDLLAVGLRQAAQWSEIVNDVTLTYKNNQEKYAADYTSQQSYGELSGTRSTQLENGTDAQSQADAFLESRAYARTYPEELTIPLHSPTVSDATRDALILMHVGSAVYTQDLPAVFGTVFDGFVEGIKWNLDRYTATMTLICSATSETYPSPIWLQIAPTVTWAGYTPSTTEWQDL*
Ga0049081_1000073120	F036209	GAG	MDMAEKVTVKMTPDSRDLRSLYKAFREMDEGAKKALRDDVTSISQWSATEMQSSYNLNPLPAQAQKVAATIRANKDRIPNVTIGGSKGRFSGGAVSGQVLFGSEFGGPAPFENGGRRFPDRSPAQGRGNEGYGIFITLKRIQPELTRRWKDAVNRRVIEKWSDNG*
Ga0049081_1000073121	F009265	AGG	MQYTVTTKQGNNYIVSDENAWLWIEIERELGYTVSQAAEKMSQGSLDVITCMLYKAAKAQGHTKLPNQQAWVTNEFETFEVVEDSPKENSLTDSSE*
Ga0049081_1000073122	F009526	AGG	MPATYITGRSLTLTINSVSYADQASTVTLEMENNQQVLEVLAGRAYKTVDKTATLNVELFLDDTSSAGIISALWDAALAAPDTALTFSFDVNGDTFAGKVFPVFPTVGGAATDVLTTSLSFVVEDGAVTRT*
Ga0049081_100007313	F038217	AGG	MTNNKPEPPDDKPMNIYLSLNSALSVANWIAPTDVAAITLARRLAIALDTAFDMGELKDATSLAAKYIQVLQQLHLTVETRTAGKQGEENDGTNHVGNYLRLLETKDRKPKPKPAQRRASGGGTS*
Ga0049081_100007315	F040620	N/A	MTRWVQVKHDELLEYVAMVEYLRKDHTQLQEQIKDAKELASIIEATYKARLDKLTDYILDIHPSNYKYERGLLDAYNIVSGHE*
Ga0049081_100007316	F044983	GGA	MSDEVWASIERKIHGHYLAAQNLPASCPQCAKILEPVDFGVDPDSNERLWVTHCCGNWDKYLEKLGPADLI*