Scaffold Ga0049081_10000525

Overview

Basic Information

• Taxon OID: 3300005581
• Scaffold ID: Ga0049081_10000525
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14738
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 23 (79.31%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.701094
  • Long. (^o): -82.854085

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004450	Metagenome	437	Y
F011669	Metagenome	288	Y
F018719	Metagenome	233	Y
F020323	Metagenome	224	Y
F025266	Metagenome	202	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0049081_1000052510	F025266	AGGAG	MRHPEPQIVTLYRNTLQAEPPRVCHTCDHYRPDGVCAEYNDTPPPEFASEPGGCALWEWEVPF*
Ga0049081_1000052520	F020323	N/A	MNKIIQLKAKLRAAQAELSIRTRTHNSASRAYNKVVQRITDLEKKIEDLEKIPS*
Ga0049081_1000052522	F004450	GGA	MNWVAAALVALVMSTAYLLDGPSEDEARVDTVEERIQKMCGENAGWKMLADGSVQCFTHRGFKTRKVQL*
Ga0049081_1000052523	F011669	AGGA	MNDDDDYELANLMFVIATVILVLFAMVGIAGLAGFIWGML*
Ga0049081_1000052526	F018719	N/A	MTPTFNTWDRAVLDKFALEAYLRLQKQQDQLEQLRGDLKDAIEAYRALNKGSSS*