Scaffold Ga0049081_10000504

Overview

Basic Information

• Taxon OID: 3300005581
• Scaffold ID: Ga0049081_10000504
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14989
• Total Scaffold Genes: 47
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 39 (82.98%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Associated Families: 7

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.701094
  • Long. (^o): -82.854085

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024533	Metagenome	205	Y
F045622	Metagenome / Metatranscriptome	152	Y
F055551	Metagenome	138	Y
F057311	Metagenome / Metatranscriptome	136	Y
F057945	Metagenome	135	Y
F091391	Metagenome	107	Y
F095154	Metagenome / Metatranscriptome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0049081_1000050411	F024533	AGAAG	MPIQKTCPRCGVSHTKRGPYCSRSCGNARQHTEEDKQIRSQKLLEYHLTPEGAATRAKSGKIVTAIKRGEDWSSVEIDEYAINIPDVTDYSADYDDSWQRAEKW*
Ga0049081_1000050412	F091391	N/A	MAEIYTFTPKTKPQRFIELDRLRAKLLELHEARDALNKEIRYTKDAITLLEKGEK*
Ga0049081_1000050416	F055551	AGAAG	MNTSKANTNKPWLSPEYDIPVLENEEMWSQKVIDDTAGYIWLEIDREKNDKETKEK*
Ga0049081_1000050428	F045622	N/A	VKQLLEILPKLLGVMPELVKYIKYIPILMILGGIGYGAYYVMQNYRDPYKCFNNQLFKQKSIDSNVYIFIGETCIDGDEKSIQSE*
Ga0049081_1000050434	F057945	GAG	MNEYKWERFSDRYYYYNIATGKVVGTVSKIALQDVWISLVYIGEYTFTPQDEKHLGQYISLEFAKDAAQRFWDIQNRTLLE*
Ga0049081_1000050442	F095154	AGGAG	MYTAGDRKFKRLAAAIEYAKKEFVRTGVVLGIEPVVVLNKTPGYVDYLAKGMKL*
Ga0049081_100005049	F057311	N/A	MWQKMQKKSSGLKAKRLKIDIEYKTKFWHPVVRNGWWLKFSTYRDHFILLMIVSQYTGQTIIRYYEDENEAVAFINFVTTCNSQDILLSA*