Scaffold Ga0049081_10000475

Overview

Basic Information

• Taxon OID: 3300005581
• Scaffold ID: Ga0049081_10000475
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15322
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (75.86%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.701094
  • Long. (^o): -82.854085

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008296	Metagenome	335	Y
F010232	Metagenome / Metatranscriptome	306	Y
F010612	Metagenome	301	Y
F015719	Metagenome / Metatranscriptome	252	Y
F023324	Metagenome / Metatranscriptome	210	Y
F056346	Metagenome / Metatranscriptome	137	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0049081_100004751	F023324	N/A	VALYVTGITDPKQLGAAALAGLAGPVLKWLDPSATQFGRGSE*
Ga0049081_1000047511	F056346	AGGAG	MSSTESPISINLKTAGGTQITLRADTADQFADMIAQGIHIITDAVTEVELAVKGTSANKPMSVSDIASSFNSNISSNESGGEQTVEDKWGNTWVYNKPGAPSCERGVMVLKYGKAQATGKPYKAFYDPAAAPNWTGPKIPAELRTKPIFA*
Ga0049081_1000047513	F015719	AGGAG	MTMYYTEVDGTEPTVSTQVGGIKYTFTNESLTKLIEEKEQLKVELAQLERKFRSARFDVREFFQSRYETDSDEIVCEVDDVNNLLINLETEALTRSWSATVTITATVTGIEAPNAEAAQEILDDAFEVNLTVDGDVWVDDVSVESVHAES*
Ga0049081_1000047520	F010612	AGGAGG	MLDEDTPQWEHTVWIMAKVRCRTTHINIDTAGDEALDDPNEWYVLEFDKGVKHSQEIVRVR*
Ga0049081_1000047521	F010232	N/A	MRTREELFKIKEAFAYAMLDLLDVYDELLATGRVYVDEPTVNDLAKNQEESNA*
Ga0049081_100004755	F008296	AGG	MTEAWVQEYDLLVSTLGMEYARKYSIIEPADIRQILWLWFVTHPNKYTEWSKLPPKDKEKLIAKSLRNAAITYCEKEKARKFGYDMVDLYYYDPSVIEAFLPSILADSYEIPSKIQDLNFQFGKSGEVTDGTNWLVLRSDIEKAFNQLPEAKQNILRLKFTIENCEWTELGKELNTSADGARMRVNRAINSLIRILGGWRSFNDTDNLVDKEQDEEEDDTRA*