Scaffold Ga0049081_10000381

Overview

Basic Information

• Taxon OID: 3300005581
• Scaffold ID: Ga0049081_10000381
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 17072
• Total Scaffold Genes: 37
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (8.11%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 7

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.701094
  • Long. (^o): -82.854085

Associated Families

Family	Category	Number of Sequences	3D Structure?
F036694	Metagenome	169	N
F041193	Metagenome	160	N
F048308	Metagenome	148	N
F052587	Metagenome / Metatranscriptome	142	N
F052596	Metagenome	142	N
F067741	Metagenome	125	N
F076085	Metagenome	118	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0049081_1000038111	F048308	N/A	MMYIELDIDQLNRLQMFNDRLKSHIDDLPRNSTGKRARYFEQVKVMELFIEQNLKKFI*
Ga0049081_1000038126	F052596	N/A	MNYEKFKQIIDLQISHNNRVDEMYKLKIDIVEFFDEITRVTELLWTEVLTDNGDYHLCYYLYEMNGINGTPDLNEEYKDTRELYDYLIENKGFK*
Ga0049081_1000038129	F041193	N/A	LTAYSQSLIINNKDTLICFSSDKAKFLAKQYHKAEAYYLSDSLCQQQLIFKDSQVKLYKKNEDKLQSIIGNQVSIIKFKDEENKSLTIQMKGLNLEVKKQKRLKGISIIFGVSCLVFALVK*
Ga0049081_1000038130	F052587	N/A	MFNKSVILCLITLCVHLLILWFLYSPYNELGIIQGYRIEIDSLNKVNDSLYSDIKKNKVIIDKYTQKLNLLENKKQTVIIKYKTKVNEIDTLNNNNLVAEFDSIFSKFNYK*
Ga0049081_100003815	F036694	N/A	LSIKSIIDKHFADNYTYYKSVCKRYYNGRYLAEDLLHELYLKLSNSNPDQIERYHKANKLNCLGLLIIKDLFRHRTQKLFHIDGNTSNLFEAANFEILDFKQVDEEYFQIDEILIDKIKNCIFDGLLNQDHDIEVFVMAQIEPLYRMEQRTKINRSSLKKAYENARVKLKNQLK*
Ga0049081_100003816	F076085	N/A	MNNLLSVSEFATLHSVSHQAIYYKIKTNQIKYIMIGKTKFIEKGSKYKRRAKNNCLIISKLHN*
Ga0049081_100003818	F067741	N/A	MKKFKIDFLDCDKCIAFTKFTKWETIEDCRLYAYVVMMNKVTTIQTFNITTV*