Scaffold Ga0049081_10000150

Overview

Basic Information

• Taxon OID: 3300005581
• Scaffold ID: Ga0049081_10000150
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 26731
• Total Scaffold Genes: 54
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 43 (79.63%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.701094
  • Long. (^o): -82.854085

Associated Families

Family	Category	Number of Sequences	3D Structure?
F035299	Metagenome	172	Y
F064500	Metagenome	128	Y
F068569	Metagenome / Metatranscriptome	124	N
F090401	Metagenome / Metatranscriptome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0049081_1000015032	F064500	AGCAGG	MSEYIHMDDAYEWLREKEVQFAEQDFSRVQAERDQLKLKVHELYTEVERLSRELAR*
Ga0049081_1000015041	F090401	N/A	MRKYTGSSDGVSKTKAARPGLLKLIDLSQRRWGFTNMGSFSNRMMNNPKAVAGDPKWLSVHATGRACDLGYKDRKDAVEAWDWFVLHADALEIEEIHDYAYDANVKDKVQGWGRGYRCQRKPGEKLVKIYNDKDNAGSRGGRWLHLELSPAMADDPERFEAAWRSLPKPA*
Ga0049081_1000015044	F068569	AGGA	MIKLQTLILRIFGVFGSSALAAVAGGAIFGVELWKSAAIAGVVAAGKVTEALLRSWSEDGNLTREEVAAAFGKKA*
Ga0049081_1000015052	F035299	N/A	MTTFKPPTDNYVNWALPGERGILAVLRPGRRGRNVFKMNDGSFTEFQPSEQEDVAITYHGGHVHTIDATEEADLRAAGYGDYIEA*