Scaffold Ga0049081_10000117

Overview

Basic Information

• Taxon OID: 3300005581
• Scaffold ID: Ga0049081_10000117
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 29906
• Total Scaffold Genes: 50
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 30 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.701094
  • Long. (^o): -82.854085

Associated Families

Family	Category	Number of Sequences	3D Structure?
F044299	Metagenome	154	Y
F078707	Metagenome / Metatranscriptome	116	Y
F095464	Metagenome / Metatranscriptome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0049081_1000011723	F078707	N/A	MNKDLNFYLKWAGTVVLIIGTAVNSLGYYPEGPLILGIGGLIWLIVSIRWQEPALVTTNFIMTFTGFAGLAYRYFS*
Ga0049081_1000011747	F095464	AGGA	MTPREQSFCYLKQYIRAQTTAPWIAKMNDVEDRARWALQHLGGMAGDWYPYRHECHYYYPQRKQE*
Ga0049081_1000011748	F044299	GAG	MNKVSKYLISIDRPPYVNGRPVGQATPCQSYGESAWFISFRDGYTHASDPVFTDEDGLNGAPSIVKYAKNIGYIEE*