Scaffold Ga0049081_10000069

Overview

Basic Information

• Taxon OID: 3300005581
• Scaffold ID: Ga0049081_10000069
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 36163
• Total Scaffold Genes: 56
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 47 (83.93%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.701094
  • Long. (^o): -82.854085

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008023	Metagenome / Metatranscriptome	340	Y
F012098	Metagenome / Metatranscriptome	283	Y
F014968	Metagenome	258	Y
F016389	Metagenome / Metatranscriptome	247	Y
F030064	Metagenome	186	Y
F084140	Metagenome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0049081_1000006915	F014968	GAG	MSHIVNLSKEEVRACADIALNRWMIKFGSVDRPNYTNKAILEPEIAANVRTIVAEYAVAKLYKKSFTFPFYTNEEHYYRKDIAEVSTNIEVKSIRTKDEIPVFPKDIRDGWLLVGARVLDRDYYSEVEVFGWMRMEDCQREEWKYAPEGSWRIPLDQFNQSMLD*
Ga0049081_1000006929	F030064	AGGAG	VTTTFATIGIIAGALISIGILLSPFYKKLKRWSAWFERFMRDWEGEEEEPGRARVPGVMERLNKLDGELSNNGGSTTKDKVDQLHDNQAIFMKSVSERLSAIENCLTVTPTDGPKQEKI*
Ga0049081_1000006932	F016389	N/A	MKLIRKFAMQGHAVPSGVHSPRGPFPPEVLAQPRMDYGDQHSDSLHVGLDDVRFFKCRACEEVLLETELTNHDCEEINGY*
Ga0049081_1000006935	F012098	N/A	MPKVHNIGSNHFVQFTKFPYTWGSKLLVRGWTQEIEEPYRTSQPFIVRLPGYKALVLGRWSGMRNEEEALNGALERRDVTYDDFTEKAGWTAPEQSREAGRQDIYSRFDLMDGAIDVHIGQELDRLAKTSE*
Ga0049081_1000006936	F084140	GGAG	MYILGKNLTGWQKHQSDADLDELLMGAEAFYAIAKELKKRS*
Ga0049081_1000006943	F008023	AGGAG	VANTPTSPLDATGKAAETAAKKNAEQLRKRKDEISIAAQVEAESLEKDIFDPKHPDAPLVLDEIENVGVSTAGDMVVIRTITDIDDMTYGVGNSYSFKAGVKYRVPAALASYLEQLGYIWRPN*