Scaffold Ga0049081_10000064

Overview

Basic Information

• Taxon OID: 3300005581
• Scaffold ID: Ga0049081_10000064
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 37244
• Total Scaffold Genes: 56
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (21.43%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (20.00%)
• Associated Families: 10

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.701094
  • Long. (^o): -82.854085

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008495	Metagenome / Metatranscriptome	332	N
F009267	Metagenome / Metatranscriptome	320	N
F011222	Metagenome / Metatranscriptome	293	N
F011668	Metagenome / Metatranscriptome	288	Y
F014249	Metagenome / Metatranscriptome	264	Y
F018136	Metagenome / Metatranscriptome	236	N
F020694	Metagenome / Metatranscriptome	222	N
F034928	Metagenome / Metatranscriptome	173	Y
F044972	Metagenome / Metatranscriptome	153	N
F058998	Metagenome / Metatranscriptome	134	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0049081_1000006410	F009267	N/A	MKKTKNNELQKDDEILRIQAMEDGPKKVNGHLLRPITALTISWMQRNEVFSGDMDLVWKSAAFAYLHSEPYSAIRSVVNDRSAFINAVDSWIEKNMIHHLEISAMTSAMNAAFEFYNASATQSKEGSGSGN*
Ga0049081_1000006420	F011668	N/A	MSARKIALLMILLSFVFLGMALLTSCAGFHNPAFCVKTDYGTFCYELPEIPSLKK*
Ga0049081_1000006437	F034928	AGG	MNNPRQQSWRGYSLRCWPNHQDDCYRWDWEVKIGEEWVEVVTQSTRWIEEEAEESLQRYLKRQQK*
Ga0049081_100000644	F008495	N/A	LKILIVYHLRLGDIARCLPIAKYFADKGNKVWFECLPEYHGLFELVDYCTPLYPQNSRNDFDRVIDLQIWPDLHQEFCQSEKNWSDFVYDLLPEGKDINRQIVLNSPSIITPPELKSWVLCFPTGYSQDKKIHPAEVIQAAHQIANGRPVLCAGKAAHGMREFESIEYMCAYIRDAQEVVTINTSSSILASALRKNWIHISDSPKHDFFHPNQSRIERKF*
Ga0049081_1000006445	F058998	N/A	VTKNNKTTNSSDLQDKIRDAQVKNILEKLKSGKTLTARESVIIGEYAAEKDNNGKKLTQRDIAKAWGMTQPNVHKMVKQGMPMDSMEAAAEWRKDFLEGRGRGSDAPASLNDARLRKTLLECERIELALAVDRGEYSKNTEVKESGIRVGSIFTAKLNALVNDASGALAGLDEASLKKKLHERVQGILAEIQMELAKV*
Ga0049081_1000006447	F014249	N/A	MAMNKTYFGLPLAILQELQTDFTACLKAIAVAGASYSIAGRSFSRANLTEVAQTIKELQAAIDNAGGNRVTRYTPTFPTQRP*
Ga0049081_100000645	F020694	N/A	VGLLDIFTSDLCAVLNELPMAVTFGGRDFLANRTTYRRENTLGDGGFMNTAAMTITAIYDSQTQTISLGDILVIGGRKFRVLAADLSQDAVSVDFTLEDINK*
Ga0049081_100000647	F018136	N/A	MITDSTYTLTLEKALTDAFILALQQEMQGSLVVTAAENFGTITLPACFVKCTRQRESIINSAIFEFNVDISLVVQADDSDQMAFENLWSQVLCISHDIFGLKTKINSIRPQYAFVFGILRDGAVSFSTTDRHFERSVTITAHASLFAS*
Ga0049081_100000648	F044972	N/A	MPATVITSSVASGVEFGLLQETGLLLNSFSRSVQSDKATVMDALGDTVAVAYFNKTATISLDGVINGGVAYELANILTLANDTSSYGVSGGAVIVDSVAEKTGAGTFKTITVSATQYPEIV*
Ga0049081_100000649	F011222	AGGA	MEPNKKFFHTINLKAAVALATLGFKMNKPPITRLVRTDGKESTEFWFEGENNKGEEASKVYRQMTKEGDELEESDPENPICYIRAALANRDVLVDIIRNTPRLIEIEHNGKRIAISENASEKTKKEMTRFLK*