Scaffold Ga0049081

Basic Information
Taxon OID	3300005581 Open in IMG/M
Scaffold ID	Ga0049081_10000058 Open in IMG/M
Source Dataset Name	Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300005581 Open in IMG/M

Scaffold ID

Ga0049081_10000058 Open in IMG/M

Source Dataset Name

Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	38725
Total Scaffold Genes	44 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	40 (90.91%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (100.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

38725

Total Scaffold Genes

44 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

40 (90.91%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (100.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location
Location Name	Great Lakes, Michigan, USA
Coordinates	Lat. (^o)	44.701094	Long. (^o)	-82.854085	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Great Lakes, Michigan, USA

Coordinates

Lat. (^o)

44.701094

Long. (^o)

-82.854085

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F007519	Metagenome / Metatranscriptome	349	Y
F010754	Metagenome	299	Y
F034467	Metagenome	174	Y
F053072	Metagenome	141	Y
F054583	Metagenome	139	Y
F082158	Metagenome / Metatranscriptome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0049081_1000005810	F010754	AGG	MNDWKECRNCGDDIHSERWSLGYRVCLFCGEEAAREERMSWCVVQEYGKGNYQLVTPASARVTLKQTNQKELRG*
Ga0049081_1000005819	F053072	AGGAGG	MRFLTMVERFTLWIKGGSMVIVDIGYKKYIMPKEKAMQLVEVLESAEIYEEKYWSEDKRKELGMTETYTYHVYPNEANFSMQIIGDSKYQMARLAGKPQEK*
Ga0049081_1000005822	F034467	AGGAG	MKDEMKYQSKVIPLRGYDHPKFKWINSSQTDVRRTWRKARLLIRLTNGAAYESRT*
Ga0049081_1000005824	F054583	GGAGG	MRGTGFGNVLAGNIAALKGQKRNEKRMSQKWKMCWKCQKDKSPNGGFLRITAGLHKFICKDCMDAKQKKLEDV*
Ga0049081_1000005828	F007519	AGGAGG	LTTGIEYLKVEKKRKGRGLGKKPALACTSLRLPKEVMDYFDTNHRMSKQAKMREVLTEYVNNQTGNKP*
Ga0049081_100000589	F082158	AGAAGG	MTTVTQVSTLSLEALRQGVADAVKRAYGAERDYAHKLCDVLPVEWYLVEHNDKGEDAKQVHAEKKALFKALNEAEHTNPSTVWARVRKYAQEHIEGTPEKTDGSTDASVGARQNRSLTLRLVEELTTLYKATKNADSLSDKERDCQTHIASALMAMGIDLATIQD*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0049081_10000058

Overview

Ecosystem & Geography

Associated Families

Sequences