NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0049081_10000058

Scaffold Ga0049081_10000058


Overview

Basic Information
Taxon OID3300005581 Open in IMG/M
Scaffold IDGa0049081_10000058 Open in IMG/M
Source Dataset NameFreshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)38725
Total Scaffold Genes44 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)40 (90.91%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location
Location NameGreat Lakes, Michigan, USA
CoordinatesLat. (o)44.701094Long. (o)-82.854085Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007519Metagenome / Metatranscriptome349Y
F010754Metagenome299Y
F034467Metagenome174Y
F053072Metagenome141Y
F054583Metagenome139Y
F082158Metagenome / Metatranscriptome113Y

Sequences

Protein IDFamilyRBSSequence
Ga0049081_1000005810F010754AGGMNDWKECRNCGDDIHSERWSLGYRVCLFCGEEAAREERMSWCVVQEYGKGNYQLVTPASARVTLKQTNQKELRG*
Ga0049081_1000005819F053072AGGAGGMRFLTMVERFTLWIKGGSMVIVDIGYKKYIMPKEKAMQLVEVLESAEIYEEKYWSEDKRKELGMTETYTYHVYPNEANFSMQIIGDSKYQMARLAGKPQEK*
Ga0049081_1000005822F034467AGGAGMKDEMKYQSKVIPLRGYDHPKFKWINSSQTDVRRTWRKARLLIRLTNGAAYESRT*
Ga0049081_1000005824F054583GGAGGMRGTGFGNVLAGNIAALKGQKRNEKRMSQKWKMCWKCQKDKSPNGGFLRITAGLHKFICKDCMDAKQKKLEDV*
Ga0049081_1000005828F007519AGGAGGLTTGIEYLKVEKKRKGRGLGKKPALACTSLRLPKEVMDYFDTNHRMSKQAKMREVLTEYVNNQTGNKP*
Ga0049081_100000589F082158AGAAGGMTTVTQVSTLSLEALRQGVADAVKRAYGAERDYAHKLCDVLPVEWYLVEHNDKGEDAKQVHAEKKALFKALNEAEHTNPSTVWARVRKYAQEHIEGTPEKTDGSTDASVGARQNRSLTLRLVEELTTLYKATKNADSLSDKERDCQTHIASALMAMGIDLATIQD*

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