Scaffold Ga0049081_10000056

Overview

Basic Information

• Taxon OID: 3300005581
• Scaffold ID: Ga0049081_10000056
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 39444
• Total Scaffold Genes: 69
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 57 (82.61%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.701094
  • Long. (^o): -82.854085

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006587	Metagenome	369	Y
F010016	Metagenome	309	Y
F018532	Metagenome / Metatranscriptome	234	N
F029418	Metagenome	188	Y
F031359	Metagenome	182	Y
F033405	Metagenome	177	Y
F046899	Metagenome	150	Y
F082592	Metagenome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0049081_1000005628	F082592	AGGAGG	MINYKGDTTSIDNLEDALELFARNGIWVRITDKAKTDPYGKGLKEAFFKGAKNED*
Ga0049081_1000005634	F031359	GAGG	MTDKKQKQIIVEQVMVTGYVKHSNGRKTKFEFYKNDFKPNDLVGIFEGVGRIYQ*
Ga0049081_1000005635	F029418	GGAGG	MTQHQVNEEKKRKFEEDIIEVAVAEYYEYVDVHKRTRSEKDAKMFYDAMRLGIVRGINFATNQYMQSLKNFEEGKKDGSNN*
Ga0049081_1000005645	F006587	AGGAGG	MSEEYKGTGFVLVGLIVGCCITWGVMQSIHMQKKSKANLKCIQGELYEEVRTNMFVKSHLECFEQKTLVP*
Ga0049081_1000005647	F033405	GGAG	MINKKTDEQIIEAVNQYMEKYPNASRNHIVLHATGSATRVRELAKQGLIKLPKALPKGANTNWNGYFNNTSETNTKRQGMKYNV*
Ga0049081_1000005649	F046899	AGGAG	MSNTSNFSPSARMAIKEFEVWQMKVFKKNAKKGWRFFNPDAFDRPTPRSAREAWGAPYKPDNFEKNEDRNSKIMFAIVIAVLLLLSVI*
Ga0049081_1000005655	F010016	N/A	MKKTSRNDVTGDWMQSKPNNEMFEKNFDLIFRKKKPELAEYELNKSTGNVQKVDHGDTTNTQE*
Ga0049081_100000566	F018532	AGGAG	MDQTLELLLSRIEDQRKTVLNNLGDGAAKDFASYQNMAGYIRGLSVAESLIKDLAQRMETYDDE*