Scaffold Ga0049083_10088974

Overview

Basic Information

• Taxon OID: 3300005580
• Scaffold ID: Ga0049083_10088974
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG MI27MSRF
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1074
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.504638
  • Long. (^o): -83.045851

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032264	Metagenome	180	Y
F045069	Metagenome	153	N
F081291	Metagenome / Metatranscriptome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0049083_100889743	F081291	GGAGG	VRRLDYWKAKLKTAQVEERIRQKELNQMTKAFERALGQVDDIQKRIDDEKAKLARPE*
Ga0049083_100889744	F032264	GAGG	MSDFKDPEVQREILIDYLQVMIARCDWHGVADVAMDLREMEAERRATT*
Ga0049083_100889745	F045069	GGAGG	MKYLLLLLAAPAMAAAPDYLTYTNDISVQTVLTQDRPNWCHGMKMAFDIDGLQRAYYGCWATAQGFAHIEMLDGSRRIIPMSKFTKPKEETK*