Scaffold Ga0049083_10069225

Overview

Basic Information

• Taxon OID: 3300005580
• Scaffold ID: Ga0049083_10069225
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG MI27MSRF
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1236
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.504638
  • Long. (^o): -83.045851

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011077	Metagenome / Metatranscriptome	295	Y
F018929	Metagenome / Metatranscriptome	232	Y
F020851	Metagenome / Metatranscriptome	221	Y
F098668	Metagenome / Metatranscriptome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0049083_100692251	F020851	GGAG	MEDIVDLAISMTEIDTGIQLSLEEREAMVKKILIKLKNN*
Ga0049083_100692253	F011077	N/A	MIDTNLTWAEEDVNLWKGWTYSPEKNRYYFNDIGNESLTAFWADEFLNQAYN*
Ga0049083_100692254	F018929	GAG	MTNQEIADLLNKASYKIWDTTKVMKNQDYHDGVVKGLKMASNIVSKL*
Ga0049083_100692255	F098668	AGGAG	LIINNIANLISASGSFNLDEALRAVAELHIPEGTLFHRCQEDKKPWPCLTIQAIERELTKS*