Scaffold Ga0049083_10042798

Overview

Basic Information

• Taxon OID: 3300005580
• Scaffold ID: Ga0049083_10042798
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG MI27MSRF
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1607
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (33.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.504638
  • Long. (^o): -83.045851

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027756	Metagenome / Metatranscriptome	193	N
F032548	Metagenome / Metatranscriptome	179	Y
F036564	Metagenome / Metatranscriptome	169	N
F044916	Metagenome / Metatranscriptome	153	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0049083_100427985	F044916	N/A	MTKRKSKIEKSLDKEQKTFALMAKKIIDAIKDEKELRAFAKTSLEILYKDNPNLFSDHAKLKLKKK*
Ga0049083_100427987	F036564	GGAG	MKLGRICVDLNYIVDMDNDDMVAHATEALYEDLMQGVKYGDLANWIRISEDKDAKEDMIPEFLLEEKND*
Ga0049083_100427988	F032548	N/A	MNYNKEMDKAIKILEELVIQADEDCPQDCRTMHFVNALEQASEFIMEHKNTK*
Ga0049083_100427989	F027756	N/A	MKLKDLIDRKILFINFPINRYSIQEGKVSEISPAEKCIKINNDWHLINNIRIIELFSKEERPSLGFN*