Scaffold Ga0049083_10027013

Overview

Basic Information

• Taxon OID: 3300005580
• Scaffold ID: Ga0049083_10027013
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG MI27MSRF
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2057
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.504638
  • Long. (^o): -83.045851

Associated Families

Family	Category	Number of Sequences	3D Structure?
F054039	Metagenome / Metatranscriptome	140	N
F078723	Metagenome / Metatranscriptome	116	Y
F080054	Metagenome / Metatranscriptome	115	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0049083_100270131	F054039	GAG	MIDISPNYKRLAKVLNKTRKSLTQTCHELGIDVDDIEDHVLIEVIDQCSHCNIWSQQLVKDLDYNPVCPTCVRLTGL*
Ga0049083_100270133	F080054	GGAG	MSTQPNYTAELETLILDVLLPVYEQHCRQRGIASLRNEINPELLKQLKKKKTIPRLFMPKTNNKF*
Ga0049083_100270134	F078723	N/A	MSYDILINSLVNGESITVTKPDGTTFTEPRPPNRTALAAAKAIQNLQNQLNFGTVAINQLTNERNELMDSITRLQEQNKRLQDEINTTTSTITSADGDSNSPSTG*