Scaffold Ga0049083_10017371

Overview

Basic Information

• Taxon OID: 3300005580
• Scaffold ID: Ga0049083_10017371
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG MI27MSRF
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2598
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.504638
  • Long. (^o): -83.045851

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009073	Metagenome / Metatranscriptome	323	Y
F053303	Metagenome / Metatranscriptome	141	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0049083_100173712	F009073	N/A	MKNYQILLTAIGSFFVGVSILNGTAQQYVHFAGPENELGCATIALIMGVLSTYAIDWKGFLNYLNK*
Ga0049083_100173717	F053303	N/A	MANLKISIGGTIYQINEKAFRKLGWNKEPITPYFYVSYAAAGQLVKQWVKNNYPNVVCRVKGDSFGGGNSMHVNVCNPDGTPIGQADYEAINNFAHLFEYGRYDGMHDLYESYESSGLKTDNGTKLDAGVKYVGVDNRPSFGTVEWARAEMNAGREYKELSRYCDTKILDKALAA*