Scaffold Ga0049083_10015803

Overview

Basic Information

• Taxon OID: 3300005580
• Scaffold ID: Ga0049083_10015803
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG MI27MSRF
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2728
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (20.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.504638
  • Long. (^o): -83.045851

Associated Families

Family	Category	Number of Sequences	3D Structure?
F039943	Metagenome / Metatranscriptome	162	Y
F067397	Metagenome / Metatranscriptome	125	N
F070857	Metagenome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0049083_100158033	F039943	N/A	MKEILNGSSLNEHRQEKEYGWKPITSKKKPVKKSSEYIYAFIGVVIGLTMGILTSILMYRDSQRCNLLLEENKLLKEMLYYRDINPMESP*
Ga0049083_100158034	F067397	N/A	MGRMKELYYELLQANNGEIPQEVTIADLAKMNDLKIYEWREYERSQNNIKKPKNEGNIEWEQS*
Ga0049083_100158038	F070857	AGAAG	MKVICIDADNKPQNVPVEEWVQEGDMYTVTRIVKMGLQKDIYGFLLKEVQLSSRSFPYELYDSSRFLPIGILSDMKEEEKINIEDVNLELI*