Scaffold Ga0049083_10013998

Overview

Basic Information

• Taxon OID: 3300005580
• Scaffold ID: Ga0049083_10013998
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG MI27MSRF
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2908
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → unclassified Opitutae → Opitutae bacterium Tous-C10FEB (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.504638
  • Long. (^o): -83.045851

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001298	Metagenome / Metatranscriptome	727	Y
F015971	Metagenome / Metatranscriptome	250	Y
F077033	Metagenome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0049083_100139981	F077033	N/A	ALPDSEGIPGFEVANATDTGTGLGVQVLVGMEQSGFMNVTATILAGCSVGRASSLVRLVVS*
Ga0049083_100139982	F001298	N/A	MSLYADFLADAKEMIADFGVAGSANSGAITFQCLISDPAVMTVLEAGGYMERTQYSVRMPAVTASWTLPDGSTGSSAALLSAGVPIASLGQGKKIVAGGKTVRITTQTHKPGSAWITLVVIDDNQ*
Ga0049083_100139985	F015971	N/A	MGTKSIRHICESTLATYLSTQTGLTTVTFLTGDNNATQTLPKAVVLCESARAPSDLPEGEGNYACSVRITLFSNADDTTLADHRLRCAALVGNMRDLVSIQAAFTATGDA