Scaffold Ga0049083

Basic Information
Taxon OID	3300005580 Open in IMG/M
Scaffold ID	Ga0049083_10006531 Open in IMG/M
Source Dataset Name	Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG MI27MSRF
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300005580 Open in IMG/M

Scaffold ID

Ga0049083_10006531 Open in IMG/M

Source Dataset Name

Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG MI27MSRF

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	4351
Total Scaffold Genes	14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (35.71%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (33.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

4351

Total Scaffold Genes

14 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

5 (35.71%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (33.33%)

Associated Families

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Taxonomy

All Organisms → Viruses → Predicted Viral

(Source: DeepVirFinder)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location
Location Name	Great Lakes, Michigan, USA
Coordinates	Lat. (^o)	44.504638	Long. (^o)	-83.045851	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Great Lakes, Michigan, USA

Coordinates

Lat. (^o)

44.504638

Long. (^o)

-83.045851

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F027756	Metagenome / Metatranscriptome	193	N
F030670	Metagenome / Metatranscriptome	184	Y
F032536	Metagenome / Metatranscriptome	179	Y
F034827	Metagenome / Metatranscriptome	173	Y
F048123	Metagenome / Metatranscriptome	148	Y
F078229	Metagenome / Metatranscriptome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0049083_1000653110	F030670	N/A	MKVIRYLKELEDEFGEPLNKWAVYEEQITANGNWAFKDAKILKTFATPHHARDWMENDSKRDY*
Ga0049083_1000653114	F027756	N/A	MKLTDLIDRKILFINFPINRHAIQEGKVSEISPAEKCMKINNDWHLVSNIRIIELFSKDERPALGFN*
Ga0049083_100065313	F032536	GAG	MSERKTFEELMRSFRFHKNPIINWFLGEVNYYSHTYLNVKWGLKNKFQRLIRGYSDSDCWNLPQAIARFILPRIKHLRKNYNSLANRNHLITIDGKVIQYKADQKNLELKEDSTGYVEGYIDKEINKPISLDASEYEYVLDEIIFALQMVVDEDSTDIGNLDRLYEVYPEGFDPIEDRQMFLTPQGDGTSLVEFENKDNIQPDYSKLNKAYERQRNGLILLGLYFKDLWD*
Ga0049083_100065317	F048123	N/A	MKPRYDFDKGKMISYDGEIIQFAGSNKIDKYSDQIEEIMSLFNLKKGEYLVTDESKISDFGKDTINILRLAKFKKKYKFSVMNKDFLYKIAERMYSYRPF*
Ga0049083_100065318	F034827	AGGAG	MKYVISSQDKEAMIDFDKLKEGEVFSFFDPESVQRGNHAIYMKIRVPNFTGANIIDLEDGKAYSFSDKKRNTINDPDEKQGNKVYKLNAKINIVII*
Ga0049083_100065319	F078229	N/A	MNKIKYTYYIEQNKDKDGNLIQSWSVYKSPSVKTIKVKTFKKLKDADTFLDTYESN*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0049083_10006531

Overview

Ecosystem & Geography

Associated Families

Sequences