Scaffold Ga0049083_10005988

Overview

Basic Information

• Taxon OID: 3300005580
• Scaffold ID: Ga0049083_10005988
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG MI27MSRF
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4548
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (75.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales → Methanobacteriaceae → Methanobrevibacter → unclassified Methanobrevibacter → Methanobrevibacter sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.504638
  • Long. (^o): -83.045851

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018175	Metagenome	236	Y
F073534	Metagenome	120	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0049083_1000598811	F018175	AGG	MDKNNKKIYDVEISKASMNFSAALDLLLSHNCYIYHDLMVEEDILSNGTHWLKYAYAFKNGKTYKFFYETNKWGDEITELNIPYNKSKTWRAEKLEINNKVYLDPGEDYLPYAIENKHIGSNFDDFAKEYDIQLKRDINWAVKMLNAGKMMTREGNPSLTLFPKKYDHAESIITTSDLFAEDWVIVQNKTFKDVLDDLYAGKTIRRKSWHSDWGVGKYARYGKLIYLDLIADDWEVVDVVAEVDKVQKDIKDGKI*
Ga0049083_1000598812	F073534	AGGAG	MFNFFNKKLPSDFDQVQEKGREVSEIFYKPNQEQPDLNLFDKVNKSKFKDFEVTSFASFFEKLELIPTVDLGDVNLKVRTTNPSAPIDADLCQVWMRRTYTNPKTGQTTEQWLNWVPNDDVAKKYFKFSLFSGETQTF