NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0049083_10005672

Scaffold Ga0049083_10005672


Overview

Basic Information
Taxon OID3300005580 Open in IMG/M
Scaffold IDGa0049083_10005672 Open in IMG/M
Source Dataset NameFreshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG MI27MSRF
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4679
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (50.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location
Location NameGreat Lakes, Michigan, USA
CoordinatesLat. (o)44.504638Long. (o)-83.045851Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004133Metagenome / Metatranscriptome451Y
F033434Metagenome / Metatranscriptome177Y
F035768Metagenome / Metatranscriptome171Y
F039639Metagenome / Metatranscriptome163Y

Sequences

Protein IDFamilyRBSSequence
Ga0049083_1000567210F035768AGGAMKITVEDRLLAAYTAQRLRLRDREDEDYRARVESEVFQKIIVDRVRRNLRLDLDKGTNVDLDV*
Ga0049083_1000567213F039639AGGAGMNFDREFIKWFYEDAYPQQGSNRRQVYSTTENSQNINVIDYWMREAFKAGAETATHGYEVNALDQFEAFNINRNYPL*
Ga0049083_100056722F004133GGAMKYTKEITDKLIEDYKAGMSVHIIADILNVPERSVIAKLSSLGVYTKKSYVNKRGETPVKKSEHIERIAELLDVNEELLESLEKVNKTVLKLIENKLAQVAPESDLLEVN*
Ga0049083_100056723F033434N/AMLFRKQEIHSLDFTGTEGLDVQGWETWAESCSLSHLHQWLLPQLVAWYGSWTLVLDDKSNYDCLATVKRNCSDPKSQAFYMLSRIKRSLLVPIMTRSPDYGTLTPLILMGFKRMQGIDYETFRGSTGLQYLLEPRLLDAVVLPSTDLETCGGLGSNRLLEIQKQGLTTKSGKTAGSIKPARSTWSLSGIQDTEIGHLPKLTQTILTQCWLAHPELRTPYMMLDLQNWDNMPQPLATNDIFKAVQTQPKQELAEILPWNL*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.